Orientation Change of a tube in Zeiss Calypso

[[BH...]]

Hello,
I am working on a program sent from our customer who wants us to use their program to verify dimensions as their are discrepancies in our results. They have a different fixture set up then ours, so we have difference of alignment.
I have a query about how can I rotate the alignment of the tube to match to our alignment, so it can also match all the existing features as well. Since, I am using special feature from base alignment (used rotation by angle option), all the hole features are keeping their original positions.
Is there any way, I can rotate the orientation while also moving the features along with it.