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I think you would need to preform prealignment.

Now you can join meshes.
At main menu there is a tools ( not know correct name ) -> mesh -> somewhere there is joining.
I was doing that while having one in clipboard, not as two parts.

Only problem is aligning two meshes.
It would be better to scan that in one go.

If you have measured data and not only mesh, then you could theoreticaly combine those data as two separate scans and transforming them as bestfit.

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